MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-598

Family name MIR-598 (all species)
Seed ACGUCAU
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Cja-Mir-598  Cpo-Mir-598  Ete-Mir-598  Hsa-Mir-598  Mml-Mir-598  Mmr-Mir-598  Mmu-Mir-598  Pab-Mir-598  Rno-Mir-598-P1  Rno-Mir-598-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010049.1: 2491075-2491132 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAUGGUUUGAUGAUACUGCUGAUGCUGGCGGUGAUGCCGAUGGUGGGAGCUGGAAAUAGGUGCUACGUCAUCGUUGUCAUCGUCAUCAUCAUCAUCUGAGCAACCACCCUGUAGC
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Structure
        10          20        30        40        50         
GAAGAUGGUUUGAUGAUAC--| C     C          GC     GU GG   UGGAA 
                     UG UGAUG UGGCGGUGAU  CGAUG  G  AGC     \
                     AC ACUAC ACUGCUACUG  GCUAC  C  UCG     A
CGAUGUCCCACCAACGAGUCU^ U     U          UU     UG A-   UGGAU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Wh
Star sequence

Laf-Mir-598_5p* (predicted)

mirBase accessionNone
Sequence
0- GCGGUGAUGCCGAUGGUGGGAGC -23
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Mature sequence

Laf-Mir-598_3p

mirBase accessionNone
Sequence
36- UACGUCAUCGUUGUCAUCGUCA -58
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