| MirGeneDB ID | Cmi-Mir-2184-v2 |
|---|
| Family name |
MIR-2184 (all species) |
|---|
| Seed |
AACAGUA |
|---|
| Species |
Australian ghostshark (Callorhinchus milii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Cmi-Mir-2184-v1
|
|---|
| Orthologues |
Ami-Mir-2184
Cpi-Mir-2184
Gga-Mir-2184
Gmo-Mir-2184
Lch-Mir-2184
Loc-Mir-2184
Mun-Mir-2184
Xtr-Mir-2184
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Gnathostomata
|
|---|
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635901.1: 1948839-1948898 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACUGAUGGACAAACUCGGCUGGUUUCACAGAACAGUAAGAGUUUAUGUGCUGUGGACAGUGGGUCAGCACAUAAACUCCUACAGUUCAGAGAGGCAAGUCACGCCGACUUCACCACCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACUGAUGGACAAACUC--| G ACA A A GUGGAC
GGCU GUUUC GAAC GUA GAGUUUAUGUGCU A
CUGA CGGAG CUUG CAU CUCAAAUACACGA G
AACCACCACUUCAGCCGCA^ A AGA A C CUGGGU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Cmi-Mir-2184-v2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GAACAGUAAGAGUUUAUGUGCU -22
Get sequence
|
|---|
| Star sequence |
Cmi-Mir-2184-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CACAUAAACUCCUACAGUUCAG -60
Get sequence
|
|---|
