MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-2184

Family name MIR-2184 (all species)
Seed ACAGUAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Ami-Mir-2184  Cmi-Mir-2184-v1  Cmi-Mir-2184-v2  Cpi-Mir-2184  Dre-Mir-2184-P1a  Dre-Mir-2184-P1b  Gga-Mir-2184  Gmo-Mir-2184  Loc-Mir-2184  Mal-Mir-2184-P1  Mal-Mir-2184-P2  Mun-Mir-2184  Tni-Mir-2184-P1  Xla-Mir-2184-P3  Xla-Mir-2184-P4  Xtr-Mir-2184 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(LatCha1_add)
JH128089.1: 395160-395219 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGAUUGUUGCCAACAUCCUGGUUCUCAGAACAGUAAGAGUUUAUGUGCUGUGAGUGUCUUCAACCAGCACAUCAACUUUUACAGUUCAGGGCGGCGGGAAGAGCACCUCCCACAGUGG
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Structure
        10          20          30        40        50         
UAUGAUUGUUGCCAACA--     --|    CA    A         U        UGAGUG 
                   UCCUG  GUUCU  GAAC GUAAGAGUU AUGUGCUG      U
                   AGGGC  CGGGA  CUUG CAUUUUCAA UACACGAC      C
GGUGACACCCUCCACGAGA     GG^    --    A         C        CAACUU 
.       110       100        90          80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-2184_5p (predicted)

mirBase accessionNone
Sequence
0- AACAGUAAGAGUUUAUGUGCUGU -23
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Star sequence

Lch-Mir-2184_3p* (predicted)

mirBase accessionNone
Sequence
37- AGCACAUCAACUUUUACAGUUCA -60
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