MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-2184

Family name MIR-2184 (all species)
Seed ACAGUAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-2184
Paralogues
Orthologues Ami-Mir-2184  Cmi-Mir-2184-v1  Cmi-Mir-2184-v2  Cpi-Mir-2184  Dre-Mir-2184-P1a  Dre-Mir-2184-P1b  Gga-Mir-2184  Gmo-Mir-2184  Lch-Mir-2184  Loc-Mir-2184  Mal-Mir-2184-P1  Mal-Mir-2184-P2  Mun-Mir-2184  Tni-Mir-2184-P1  Xla-Mir-2184-P3  Xla-Mir-2184-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(xenTro9_add)
chr2: 27689436-27689495 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2184)
Mir-132-P2 chr2: 27657646-27657714 [+] UCSC Ensembl
Mir-132-P1 chr2: 27663375-27663433 [+] UCSC Ensembl
Mir-2184 chr2: 27689436-27689495 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACUCGGCAACAGCGACUCUUGCGUCUCGGAACAGUAAGAGAUUAUGUGCUGUGUUAUCAGGCAGCCGGCACAUGGCCUUUUACUGCUCAGAGAGGCAGGGGGGUUCCUCACAGGGCUAC
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Structure
        10          20        30        40        50         
GACUCGGCAACAGCGAC--|     G    G  A         AU         UGUUAU 
                   UCUUGC UCUC GA CAGUAAGAG  UAUGUGCUG      C
                   GGGACG AGAG CU GUCAUUUUC  GUACACGGC      A
CAUCGGGACACUCCUUGGG^     G    A  C         CG         CGACGG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-2184_5p

mirBase accessionMIMAT0012192
Sequence
0- AACAGUAAGAGAUUAUGUGCUG -22
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Proposed targets TargetScanVert: xtr-miR-2184
Star sequence

Xtr-Mir-2184_3p*

mirBase accessionNone
Sequence
38- GCACAUGGCCUUUUACUGCUCA -60
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