MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-2184

Family name MIR-2184 (all species)
Seed ACAGUAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-2184
Paralogues
Orthologues Cmi-Mir-2184-v1  Cmi-Mir-2184-v2  Cpi-Mir-2184  Dre-Mir-2184-P1a  Dre-Mir-2184-P1b  Gga-Mir-2184  Gmo-Mir-2184  Lch-Mir-2184  Loc-Mir-2184  Mal-Mir-2184-P1  Mal-Mir-2184-P2  Mun-Mir-2184  Tni-Mir-2184-P1  Xla-Mir-2184-P3  Xla-Mir-2184-P4  Xtr-Mir-2184 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709726.1: 567-625 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-2184)		 Mir-132-P1 NW_017709726.1: 290-347 [+] UCSC
Mir-2184 NW_017709726.1: 567-625 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUGGAGACGCCCCCGGUCCCGGCCGCCCCCAACAGUAAGAGUUUAUGUGCGGUGAGAGCUGGAAUCUGCAUGUGAACUCCUACUGCUCCGGGCGGCGGGGCACAGCGGCCCAGCCCGGA
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Structure
        10          20        30        40        50         
CUGGAGACGCCCCCGGU--|  G       CCAA     A              UGAGAG 
                   CCC GCCGCCC    CAGUA GAGUUUAUGUGCGG      \
                   GGG CGGCGGG    GUCAU CUCAAGUGUACGUC      C
AGGCCCGACCCGGCGACAC^  G       CCUC     C              UAAGGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-2184_5p
mirBase accessionMIMAT0038331
Sequence 
0- AACAGUAAGAGUUUAUGUGCGGU -23
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Star sequence

Ami-Mir-2184_3p*
mirBase accessionMIMAT0038332
Sequence 
36- UGCAUGUGAACUCCUACUGCUCC -59
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