MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-2184

Family name MIR-2184 (all species)
Seed ACAGUAA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Ami-Mir-2184  Cmi-Mir-2184-v1  Cmi-Mir-2184-v2  Cpi-Mir-2184  Dre-Mir-2184-P1a  Dre-Mir-2184-P1b  Gga-Mir-2184  Gmo-Mir-2184  Lch-Mir-2184  Mal-Mir-2184-P1  Mal-Mir-2184-P2  Mun-Mir-2184  Tni-Mir-2184-P1  Xla-Mir-2184-P3  Xla-Mir-2184-P4  Xtr-Mir-2184 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(LepOcu1)
LG22: 10129912-10129973 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGACAGCAGUGAGACCCUGACCUCCCCCCGAACAGUAAGAGUUUAUGUGCUGUGGGCACCUCAGGAUCCAGCGCAUAGCCUCUUACAGUGCAGGGAGAAGUGUCACUGGGACACGCCGGGAC
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Structure
        10        20          30        40        50        60
UGACAGCAGUGAGACCCU   - -| C   CGA  A       U          UGGGCAC 
                  GAC C UC CCC   AC GUAAGAG UUAUGUGCUG       C
                  CUG G AG GGG   UG CAUUCUC GAUACGCGAC       U
CAGGGCCGCACAGGGUCA   U A^ A   ACG  A       C          CUAGGAC 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-2184_5p

mirBase accessionNone
Sequence
0- AACAGUAAGAGUUUAUGUGCUGU -23
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Star sequence

Loc-Mir-2184_3p*

mirBase accessionNone
Sequence
39- AGCGCAUAGCCUCUUACAGUGCA -62
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