MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-27-P1

Family name MIR-27 (all species)
Seed UCACAGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-27a
Paralogues Dre-Mir-27-P2a  Dre-Mir-27-P2b  Dre-Mir-27-P3  Dre-Mir-27-P4a 
Orthologues Gmo-Mir-27-P1  Lch-Mir-27-P1  Loc-Mir-27-P1  Mal-Mir-27-P1  Pma-Mir-27-o1  Tni-Mir-27-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr2: 33902361-33902423 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P1)		 Mir-23-P1 chr2: 33900445-33900503 [+] UCSC Ensembl
Mir-27-P1 chr2: 33902361-33902423 [+] UCSC Ensembl
Mir-24-P1 chr2: 33905775-33905834 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGAUGUCUGCUGAAGUUUCGUGAGGUGCAGGACUUAGCUCACUCUGUGAACAGAUCUCGGAUAUCCUAUGUUCACAGUGGCUAAGUUCCGCUCCUCUGAGGCCCACACUCGAAAUCAGCCA
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Structure
        10           20        30        40        50        60  
UAUGAUGUCUGCUGAAG---|    U    U  A         U    CU       GAUCUCG 
                    UUUCG GAGG GC GGACUUAGC CACU  GUGAACA       G
                    GGAGU CUCC CG CUUGAAUCG GUGA  CACUUGU       A
ACCGACUAAAGCUCACACCC^    -    U  C         -    --       AUCCUAU 
 120       110       100         90         80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-27-P1_5p*
mirBase accessionMIMAT0031949
Sequence 
0- AGGACUUAGCUCACUCUGUGAACA -24
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Mature sequence

Dre-Mir-27-P1_3p
mirBase accessionMIMAT0001796
Sequence 
42- UUCACAGUGGCUAAGUUCCGC -63
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Proposed targets TargetScanFish: dre-miR-27a