MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-23-P1

Family name MIR-23 (all species)
Seed UCACAUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-23a-3
Paralogues Dre-Mir-23-P2a  Dre-Mir-23-P2b  Dre-Mir-23-P3  Dre-Mir-23-P4a 
Orthologues Gmo-Mir-23-P1  Lch-Mir-23-P1  Loc-Mir-23-P1  Mal-Mir-23-P1  Pma-Mir-23-o1  Sto-Mir-23-P1  Tni-Mir-23-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr2: 33900445-33900503 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P1)		 Mir-23-P1 chr2: 33900445-33900503 [+] UCSC Ensembl
Mir-27-P1 chr2: 33902361-33902423 [+] UCSC Ensembl
Mir-24-P1 chr2: 33905775-33905834 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGUCAUCUCAUCAAUGGACCAGCUGGAGGGAUUCCUGGCAGAGUGAUUUGGGAUUAUAUCAUAAAAUCACAUUGCCAGGGAUUUCCAACCAGCUGUGAACUGUUUACUCCAGGAAAG
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Structure
        10        20           30        40        50        
AUGGUCAUCUCAUCAAUGGAC-       A--|GG           A       GGGAUU 
                      CAGCUGG   G  AUUCCUGGCAG GUGAUUU      A
                      GUCGACC   C  UAGGGACCGUU CACUAAA      U
GAAAGGACCUCAUUUGUCAAGU       AAC^UU           A       AUACUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-23-P1_5p*
mirBase accessionMIMAT0031945
Sequence 
0- GGAUUCCUGGCAGAGUGAUUU -21
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Mature sequence

Dre-Mir-23-P1_3p
mirBase accessionMIMAT0001790
Sequence 
37- AUCACAUUGCCAGGGAUUUCCA -59
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Proposed targets TargetScanFish: dre-miR-23a