MirGeneDB ID | Tni-Mir-23-P1 |
Family name |
MIR-23 (all species) |
Seed |
UCACAUU |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
tni-mir-23a-2
|
Paralogues |
Tni-Mir-23-P2b
Tni-Mir-23-P3
Tni-Mir-23-P4a
|
Orthologues |
Dre-Mir-23-P1
Gmo-Mir-23-P1
Lch-Mir-23-P1
Loc-Mir-23-P1
Mal-Mir-23-P1
Pma-Mir-23-o1
Sto-Mir-23-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
15_random: 3094562-3094622 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGACGCCGGGAUGGUGGAUUUAGCUGGAGGGAUUCCUGGCAGAGUGAUUUGGCUGUGAUGUAAUGUAAAUCACAUUGCCAGGGAUUUCCAACCAGCUAGAGCUGAAUGCGUCAGGUCCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGACGCCGGGAUGGUGGA- A--|GG A GGCUGUG
UUUAGCUGG G AUUCCUGGCAG GUGAUUU A
AGAUCGACC C UAGGGACCGUU CACUAAA U
CCCCUGGACUGCGUAAGUCG AAC^UU A UGUAAUG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Tni-Mir-23-P1_5p* |
mirBase accession | None |
Sequence |
0- GGAUUCCUGGCAGAGUGAUUU -21
Get sequence
|
Mature sequence |
Tni-Mir-23-P1_3p |
mirBase accession | MIMAT0002913 |
Sequence |
39- AUCACAUUGCCAGGGAUUUCCA -61
Get sequence
|