MirGeneDB ID | Lch-Mir-23-P1 |
---|---|
Family name | MIR-23 (all species) |
Seed | UCACAUU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-23-P2 Lch-Mir-23-P3 Lch-Mir-23-P4 |
Orthologues | Dre-Mir-23-P1 Gmo-Mir-23-P1 Loc-Mir-23-P1 Mal-Mir-23-P1 Pma-Mir-23-o1 Sto-Mir-23-P1 Tni-Mir-23-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126762.1: 1811296-1811360 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | UAAUGGAUGAAUAAGCAGCUGUGAUUGGUGGGAUUCCUGGCAGAGUGAUUUGGGUUUCUCUGCUACAAAAAAAAUCACAUUGCCAGGGAUUUCCAACCAGGCACAAGCCCCGCCCUCGCUGCAGUGet precursor sequence |
Structure | 10 20 30 40 50 60 UAAUGGAUGAAUAAGCAGC- A - -| A GGGUUUCUC UGUG UUGG UGG GAUUCCUGGCAG GUGAUUU U ACAC GACC ACC UUAGGGACCGUU CACUAAA G UGACGUCGCUCCCGCCCCGA G A U^ A AAAAACAUC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Lch-Mir-23-P1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGAUUCCUGGCAGAGUGAUUU -21
Get sequence
|
Mature sequence | Lch-Mir-23-P1_3p (predicted) |
mirBase accession | None |
Sequence |
43- AUCACAUUGCCAGGGAUUUCCA -65
Get sequence
|