MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-23-P1

Family name MIR-23 (all species)
Seed UCACAUU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-23-P2  Lch-Mir-23-P3  Lch-Mir-23-P4 
Orthologues Dre-Mir-23-P1  Gmo-Mir-23-P1  Loc-Mir-23-P1  Mal-Mir-23-P1  Pma-Mir-23-o1  Sto-Mir-23-P1  Tni-Mir-23-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126762.1: 1811296-1811360 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUGGAUGAAUAAGCAGCUGUGAUUGGUGGGAUUCCUGGCAGAGUGAUUUGGGUUUCUCUGCUACAAAAAAAAUCACAUUGCCAGGGAUUUCCAACCAGGCACAAGCCCCGCCCUCGCUGCAGU
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Structure
        10         20         30         40        50        60 
UAAUGGAUGAAUAAGCAGC-    A    -   -|           A       GGGUUUCUC 
                    UGUG UUGG UGG GAUUCCUGGCAG GUGAUUU         U
                    ACAC GACC ACC UUAGGGACCGUU CACUAAA         G
UGACGUCGCUCCCGCCCCGA    G    A   U^           A       AAAAACAUC 
   120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-23-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- GGAUUCCUGGCAGAGUGAUUU -21
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Mature sequence

Lch-Mir-23-P1_3p (predicted)

mirBase accessionNone
Sequence
43- AUCACAUUGCCAGGGAUUUCCA -65
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