MirGeneDB ID | Lch-Mir-23-P4 |
---|---|
Family name | MIR-23 (all species) |
Seed | UCACAUU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-23-P1 Lch-Mir-23-P2 Lch-Mir-23-P3 |
Orthologues | Cmi-Mir-23-P4 Dre-Mir-23-P4a Gmo-Mir-23-P4a Loc-Mir-23-P4 Mal-Mir-23-P4a Sto-Mir-23-P4 Tni-Mir-23-P4a Xla-Mir-23-P4c Xla-Mir-23-P4d Xtr-Mir-23-P4 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH127091.1: 1154085-1154147 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | UUACUGGGUAUUCUUUGCUGGGACUGUUGGGGGUUCCCGGCACCGUGAUUUGUUGAGAAGAAAUUUUGAAAAUCACAUUGCCAGGGAUUUCCACAUAGUCACAGGACAACUCUUCACCCUGUAGet precursor sequence |
Structure | 10 20 30 40 50 60 UUACUGGGUAUUCUUUG-- G -| GG C CC GUUGAGAA CUG GACUGU UGG GUUCC GGCA GUGAUUU G GAC CUGAUA ACC UAGGG CCGU CACUAAA A AUGUCCCACUUCUCAACAG A C^ UU A UA AGUUUUAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Lch-Mir-23-P4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGGUUCCCGGCACCGUGAUUU -21
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|
Mature sequence | Lch-Mir-23-P4_3p (predicted) |
mirBase accession | None |
Sequence |
41- AUCACAUUGCCAGGGAUUUCCA -63
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|