MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-23-P4

Family name MIR-23 (all species)
Seed UCACAUU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-23-P1  Lch-Mir-23-P2  Lch-Mir-23-P3 
Orthologues Cmi-Mir-23-P4  Dre-Mir-23-P4a  Gmo-Mir-23-P4a  Loc-Mir-23-P4  Mal-Mir-23-P4a  Sto-Mir-23-P4  Tni-Mir-23-P4a  Xla-Mir-23-P4c  Xla-Mir-23-P4d  Xtr-Mir-23-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127091.1: 1154085-1154147 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUACUGGGUAUUCUUUGCUGGGACUGUUGGGGGUUCCCGGCACCGUGAUUUGUUGAGAAGAAAUUUUGAAAAUCACAUUGCCAGGGAUUUCCACAUAGUCACAGGACAACUCUUCACCCUGUA
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Structure
        10          20         30        40        50        60
UUACUGGGUAUUCUUUG--   G      -|  GG     C    CC       GUUGAGAA 
                   CUG GACUGU UGG  GUUCC GGCA  GUGAUUU        G
                   GAC CUGAUA ACC  UAGGG CCGU  CACUAAA        A
AUGUCCCACUUCUCAACAG   A      C^  UU     A    UA       AGUUUUAA 
 120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-23-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGUUCCCGGCACCGUGAUUU -21
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Mature sequence

Lch-Mir-23-P4_3p (predicted)

mirBase accessionNone
Sequence
41- AUCACAUUGCCAGGGAUUUCCA -63
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