MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-23-P4a

Family name MIR-23 (all species)
Seed UCACAUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-23a-3
Paralogues Gmo-Mir-23-P1  Gmo-Mir-23-P2b  Gmo-Mir-23-P3 
Orthologues Cmi-Mir-23-P4  Dre-Mir-23-P4a  Lch-Mir-23-P4  Loc-Mir-23-P4  Mal-Mir-23-P4a  Sto-Mir-23-P4  Tni-Mir-23-P4a  Xtr-Mir-23-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1112: 351353-351416 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P4a)
Mir-24-P4a GeneScaffold_1112: 349423-349481 [-] UCSC Ensembl
Mir-27-P4a GeneScaffold_1112: 350547-350610 [-] UCSC Ensembl
Mir-23-P4a GeneScaffold_1112: 351353-351416 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCUGCUCAGACCAUUGCUGUGGUGGGGGGGGUUCCUGGCACCGUGAUUUGGUGCACAAAGAGAAACAAAAAUCACAUUGCCAGGGAUUUCCACUCCUUCACAGCUCGCCUGGCAUCCCAGAC
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Structure
        10         20          30        40        50        60 
AGCCUGCUCAGACCAUU-       U  - -| GG          CC       GGUGCACAA 
                  GCUGUGG GG G GG  GUUCCUGGCA  GUGAUUU         \
                  CGACACU CC C CC  UAGGGACCGU  CACUAAA         A
CAGACCCUACGGUCCGCU       U  U A^ UU          UA       AACAAAGAG 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-23-P4a_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGUUCCUGGCACCGUGAUUU -21
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Mature sequence

Gmo-Mir-23-P4a_3p

mirBase accessionMIMAT0044005
Sequence
42- AUCACAUUGCCAGGGAUUUCCA -64
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