MirGeneDB ID | Sto-Mir-23-P4 |
Family name |
MIR-23 (all species) |
Seed |
UCACAUU |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-23-P1
Sto-Mir-23-P2
Sto-Mir-23-P3
|
Orthologues |
Cmi-Mir-23-P4
Dre-Mir-23-P4a
Gmo-Mir-23-P4a
Lch-Mir-23-P4
Loc-Mir-23-P4
Mal-Mir-23-P4a
Tni-Mir-23-P4a
Xla-Mir-23-P4c
Xla-Mir-23-P4d
Xtr-Mir-23-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01000014.1: 1434855-1434919 [+]
|
Precursor (pre-Mir +30nt flank) |
CAGCCCACUCCUCUCUUGCUGUGACUGUAGGGGUUCCUGGCAUUGUGAUUUAAUGAUUAAAUAAAAGUGAAAAAUCACAUUGCCAGGGAUUACCACAGAGUCACAGGCACAGGCAGCUGCUCGCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGCCCACUCCUCUCUUG- --| A - U AAUGAUUAA
CUGUGAC UGU GG GGUUCCUGGCA UGUGAUUU A
GACACUG ACA CC UUAGGGACCGU ACACUAAA U
GCGCUCGUCGACGGACACG AG^ - A U AAGUGAAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Sto-Mir-23-P4_5p* |
mirBase accession | None |
Sequence |
0- GGGUUCCUGGCAUUGUGAUUU -21
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|
Mature sequence |
Sto-Mir-23-P4_3p |
mirBase accession | None |
Sequence |
43- AUCACAUUGCCAGGGAUUACCA -65
Get sequence
|