MirGeneDB ID | Cmi-Mir-23-P4 |
Family name |
MIR-23 (all species) |
Seed |
UCACAUU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-23-P2
Cmi-Mir-23-P3a
Cmi-Mir-23-P3b
|
Orthologues |
Dre-Mir-23-P4a
Gmo-Mir-23-P4a
Lch-Mir-23-P4
Loc-Mir-23-P4
Mal-Mir-23-P4a
Sto-Mir-23-P4
Tni-Mir-23-P4a
Xla-Mir-23-P4c
Xla-Mir-23-P4d
Xtr-Mir-23-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635918.1: 1564922-1564986 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUUUUUCUCCCCCUUUGCUGUGGCUGUGAGGUGUUCUUGUCAUUGUGAUUUGAGGCUAAAAUCACUGAGAAAUCACAUUGCCAGGGAUUCCCAUACAGCCCCAGACCAGACCAGCCAUCACUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUUUUUCUCCCCCUUUG-- U A U-| U U GAGGCUAA
CUG GGCUGUG GG GUUCUUG CA UGUGAUUU A
GAC CCGACAU CC UAGGGAC GU ACACUAAA A
AGUCACUACCGACCAGACCA C A CU^ C U GAGUCACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-23-P4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGUGUUCUUGUCAUUGUGAUUU -22
Get sequence
|
Mature sequence |
Cmi-Mir-23-P4_3p |
mirBase accession | None |
Sequence |
42- AUCACAUUGCCAGGGAUUCCCAU -65
Get sequence
|