MirGeneDB ID | Cmi-Mir-23-P2 |
Family name |
MIR-23 (all species) |
Seed |
UCACAUU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-23-P3a
Cmi-Mir-23-P3b
Cmi-Mir-23-P4
|
Orthologues |
Aca-Mir-23-P2
Ami-Mir-23-P2
Bta-Mir-23-P2
Cfa-Mir-23-P2
Cja-Mir-23-P2
Cli-Mir-23-P2
Cpi-Mir-23-P2
Cpo-Mir-23-P2
Dno-Mir-23-P2
Dre-Mir-23-P2a
Dre-Mir-23-P2b
Eca-Mir-23-P2
Ete-Mir-23-P2
Gga-Mir-23-P2
Gja-Mir-23-P2
Gmo-Mir-23-P2b
Hsa-Mir-23-P2
Laf-Mir-23-P2
Lch-Mir-23-P2
Loc-Mir-23-P2
Mal-Mir-23-P2a
Mal-Mir-23-P2b
Mdo-Mir-23-P2
Mml-Mir-23-P2
Mmr-Mir-23-P2
Mmu-Mir-23-P2
Mun-Mir-23-P2
Neu-Mir-23-P2
Oan-Mir-23-P2
Ocu-Mir-23-P2
Pab-Mir-23-P2
Pbv-Mir-23-P2
Pma-Mir-23-o2
Rno-Mir-23-P2
Sha-Mir-23-P2
Spt-Mir-23-P2
Sto-Mir-23-P2
Tgu-Mir-23-P2
Tni-Mir-23-P2b
Xla-Mir-23-P2c
Xla-Mir-23-P2d
Xtr-Mir-23-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635929.1: 195324-195383 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGCCUUCCUGCAUGCUGUUGUGACUGUGUGGGUUCCUGGCAUGCUGAUUUGUGACAUGAGAUAAAAAUCACAUUGCCAGGGAUUACCACGUAGCCACUGCCUUCUCUGCUGCUGUUAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGCCUUCCUGCAUGCU-- U A -- -| C GUGACA
GU GUG CUGUGUGG GUUCCUGGC AUG UGAUUU U
CG CAC GAUGCACC UAGGGACCG UAC ACUAAA G
GUAUUGUCGUCGUCUCUUC U C AU U^ - AAUAGA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-23-P2_5p* |
mirBase accession | None |
Sequence |
0- GGGUUCCUGGCAUGCUGAUUU -21
Get sequence
|
Mature sequence |
Cmi-Mir-23-P2_3p |
mirBase accession | None |
Sequence |
37- AUCACAUUGCCAGGGAUUACCAC -60
Get sequence
|