Mir-23-P2b

MirGeneDB ID

Mal-Mir-23-P2b

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-23-P1 Mal-Mir-23-P2a Mal-Mir-23-P3 Mal-Mir-23-P4a

Orthologues

Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2b Ete-Mir-23-P2 Gga-Mir-23-P2 Gja-Mir-23-P2 Gmo-Mir-23-P2b Hsa-Mir-23-P2 Lch-Mir-23-P2 Loc-Mir-23-P2 Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Tni-Mir-23-P2b Xtr-Mir-23-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884708.1: 577529-577586 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAUCUUGUUCUUUCAUGUCUGGGCUGUGAGGGUUCCUGGCGUGCUGAUUUGUGACUUAUGAUAAAAUCACAUUGCCAGGGAUUACCACACAGGCCUGACCCAGCCGGCUGCUAUGGC

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Structure

        10         20        30          40         50        
AGAUCUUGUUCUUUCAU-   U  G     A  --         -|  C      GUGACU 
                  GUC GG CUGUG GG  GUUCCUGGC GUG UGAUUU      \
                  CAG CC GACAC CC  UAGGGACCG UAC ACUAAA      U
CGGUAUCGUCGGCCGACC   U  G     A  AU         U^  -      AUAGUA 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-23-P2b_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCGUGCUGAUUU -21

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Mature sequence

Mal-Mir-23-P2b_3p

mirBase accession

None

Sequence

36- AUCACAUUGCCAGGGAUUACCA -58

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