MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-23-P2a

Family name MIR-23 (all species)
Seed UCACAUU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-23-P1  Mal-Mir-23-P2b  Mal-Mir-23-P3  Mal-Mir-23-P4a 
Orthologues Aca-Mir-23-P2  Ami-Mir-23-P2  Bta-Mir-23-P2  Cfa-Mir-23-P2  Cja-Mir-23-P2  Cli-Mir-23-P2  Cmi-Mir-23-P2  Cpi-Mir-23-P2  Cpo-Mir-23-P2  Dno-Mir-23-P2  Dre-Mir-23-P2a  Eca-Mir-23-P2  Ete-Mir-23-P2  Gga-Mir-23-P2  Gja-Mir-23-P2  Hsa-Mir-23-P2  Laf-Mir-23-P2  Lch-Mir-23-P2  Loc-Mir-23-P2  Mdo-Mir-23-P2  Mml-Mir-23-P2  Mmr-Mir-23-P2  Mmu-Mir-23-P2  Mun-Mir-23-P2  Neu-Mir-23-P2  Oan-Mir-23-P2  Ocu-Mir-23-P2  Pab-Mir-23-P2  Pbv-Mir-23-P2  Pma-Mir-23-o2  Rno-Mir-23-P2  Sha-Mir-23-P2  Spt-Mir-23-P2  Sto-Mir-23-P2  Tgu-Mir-23-P2  Xtr-Mir-23-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884846.1: 922549-922607 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGAGUCAUACACCUUUGCUGUGGCUGUGUGGGUCUCUGGCAUGAUGAUUUGGGACAGACAAUAAAAAUCACAUUGCCAGGGAUUACUACACUGCUAUGGCAUCUGCUACUGCUGCUUA
Get precursor sequence
Structure
        10         20        30          40         50        
CGGAGUCAUACACCUUU-        U      --         -|  A      GGGACA 
                  GCUGUGGC GUGUGG  GUCUCUGGC AUG UGAUUU      G
                  CGGUAUCG CACAUC  UAGGGACCG UAC ACUAAA      A
AUUCGUCGUCAUCGUCUA        U      AU         U^  -      AAUAAC 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-23-P2a_5p*
mirBase accessionNone
Sequence 
0- GGGUCUCUGGCAUGAUGAUUU -21
Get sequence
Mature sequence

Mal-Mir-23-P2a_3p
mirBase accessionNone
Sequence 
37- AUCACAUUGCCAGGGAUUACUA -59
Get sequence