MirGeneDB 2.1
MirGeneDB ID

Pma-Mir-23-o2

Family name MIR-23 (all species)
Seed UCACAUU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-23b
Paralogues Pma-Mir-23-o1 
Orthologues Aca-Mir-23-P2  Ami-Mir-23-P2  Bta-Mir-23-P2  Cfa-Mir-23-P2  Cli-Mir-23-P2  Cmi-Mir-23-P2  Cpi-Mir-23-P2  Cpo-Mir-23-P2  Dno-Mir-23-P2  Dre-Mir-23-P2a  Dre-Mir-23-P2b  Ete-Mir-23-P2  Gga-Mir-23-P2  Gja-Mir-23-P2  Gmo-Mir-23-P2b  Hsa-Mir-23-P2  Lch-Mir-23-P2  Loc-Mir-23-P2  Mal-Mir-23-P2a  Mal-Mir-23-P2b  Mdo-Mir-23-P2  Mml-Mir-23-P2  Mmu-Mir-23-P2  Mun-Mir-23-P2  Oan-Mir-23-P2  Ocu-Mir-23-P2  Pbv-Mir-23-P2  Rno-Mir-23-P2  Sha-Mir-23-P2  Spt-Mir-23-P2  Sto-Mir-23-P2  Tgu-Mir-23-P2  Tni-Mir-23-P2b  Xla-Mir-23-P2c  Xla-Mir-23-P2d  Xtr-Mir-23-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046069.1: 795034-795099 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-o2)		 Mir-27-o2 NC_046069.1: 793379-793439 [-] UCSC Ensembl
Mir-23-o2 NC_046069.1: 795034-795099 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGACACCCGAAGCUACGCCGAGGGCCGGAGGGUUCCUGGCAAGGUGAUUUGCGACUGCGUUUCUAAGAAAAAUCACAUUGCCAGGGAUUACCACUGGCCCUCGGAUGAAACCCACCGAAGCCGA
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Structure
        10         20        30          40        50        60  
GAAGACACCCGAAGCUACG-           A  --|          G       GCGACUGCG 
                    CCGAGGGCCGG GG  GUUCCUGGCAA GUGAUUU         \
                    GGCUCCCGGUC CC  UAGGGACCGUU CACUAAA         U
AGCCGAAGCCACCCAAAGUA           A  AU^          A       AAGAAUCUU 
    120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-23-o2_5p*
mirBase accessionNone
Sequence 
0- AGGGUUCCUGGCAAGGUGAUUU -22
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Mature sequence

Pma-Mir-23-o2_3p
mirBase accessionMIMAT0019404
Sequence 
43- AUCACAUUGCCAGGGAUUACCAC -66
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