MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-23-o1

Family name MIR-23 (all species)
Seed UCACAUU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-23a
Paralogues Pma-Mir-23-o2 
Orthologues Dre-Mir-23-P1  Gmo-Mir-23-P1  Lch-Mir-23-P1  Loc-Mir-23-P1  Mal-Mir-23-P1  Sto-Mir-23-P1  Tni-Mir-23-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046103.1: 7155810-7155873 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-o1)		 Mir-24-o1 NC_046103.1: 7153250-7153310 [-] UCSC Ensembl
Mir-27-o1 NC_046103.1: 7153880-7153942 [-] UCSC Ensembl
Mir-23-o1 NC_046103.1: 7155810-7155873 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGCAAGUGGGCCUGUGCCUUUGCUGAGUGGGGUUCCUGGCACGGUGAUUUGUAAUGUGCAGAGACAAAAAUCACAUUGCCAGGGAUUACCGCUCAGUGAUUGGCGUUUCUCCUGGAUCGACU
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Structure
        10         20         30         40        50        60 
UGUGCAAGUGGGCCUGU-   U- UG        -|          CG       GUAAUGUG 
                  GCC  U  CUGAGUGG GGUUCCUGGCA  GUGAUUU        \
                  CGG  A  GACUCGCC UUAGGGACCGU  CACUAAA        C
UCAGCUAGGUCCUCUUUG   UU GU        A^          UA       AACAGAGA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-23-o1_5p*
mirBase accessionMIMAT0019402
Sequence 
0- GGGGUUCCUGGCACGGUGAUUU -22
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Mature sequence

Pma-Mir-23-o1_3p
mirBase accessionMIMAT0019403
Sequence 
41- AUCACAUUGCCAGGGAUUACCGC -64
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