MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-27-o1

Family name MIR-27 (all species)
Seed UCACAGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-27a
Paralogues Pma-Mir-27-o2 
Orthologues Dre-Mir-27-P1  Gmo-Mir-27-P1  Lch-Mir-27-P1  Loc-Mir-27-P1  Mal-Mir-27-P1  Tni-Mir-27-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046103.1: 7153880-7153942 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-o1)		 Mir-24-o1 NC_046103.1: 7153250-7153310 [-] UCSC Ensembl
Mir-27-o1 NC_046103.1: 7153880-7153942 [-] UCSC Ensembl
Mir-23-o1 NC_046103.1: 7155810-7155873 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCCAUUUCUACCCGAGAUGCUGCAGUGCAGGACUUAGUUGCUUGUGAGCAGUGCCUUGCUUUCUGUCUUGUUCACAGUGGCUAAGUUCCACACCUCAGCAGACCAUGCGUCAAACGGACAG
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Structure
        10          20        30        40        50        60 
UAUCCAUUUCUACCCGAGA--|    CA   CA         UG  U       GUGCCUUG 
                     UGCUG  GUG  GGACUUAGU  CU GUGAGCA        C
                     ACGAC  CAC  CUUGAAUCG  GA CACUUGU        U
GACAGGCAAACUGCGUACCAG^    UC   AC         GU  -       UCUGUCUU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-27-o1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGACUUAGUUGCUUGUGAGCA -22
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Mature sequence

Pma-Mir-27-o1_3p
mirBase accessionMIMAT0019413
Sequence 
42- UUCACAGUGGCUAAGUUCCAC -63
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