MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-23-P2b

Family name MIR-23 (all species)
Seed UCACAUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-23b
Paralogues Gmo-Mir-23-P1  Gmo-Mir-23-P3  Gmo-Mir-23-P4a 
Orthologues Aca-Mir-23-P2  Ami-Mir-23-P2  Bta-Mir-23-P2  Cfa-Mir-23-P2  Cli-Mir-23-P2  Cmi-Mir-23-P2  Cpi-Mir-23-P2  Cpo-Mir-23-P2  Dno-Mir-23-P2  Dre-Mir-23-P2b  Ete-Mir-23-P2  Gga-Mir-23-P2  Gja-Mir-23-P2  Hsa-Mir-23-P2  Lch-Mir-23-P2  Loc-Mir-23-P2  Mal-Mir-23-P2b  Mdo-Mir-23-P2  Mml-Mir-23-P2  Mmu-Mir-23-P2  Mun-Mir-23-P2  Oan-Mir-23-P2  Ocu-Mir-23-P2  Pbv-Mir-23-P2  Pma-Mir-23-o2  Rno-Mir-23-P2  Sha-Mir-23-P2  Spt-Mir-23-P2  Sto-Mir-23-P2  Tgu-Mir-23-P2  Tni-Mir-23-P2b  Xtr-Mir-23-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig256800: 176-233 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUCAUGUUCUUUCAUGUCUGGGUUGUGAGGGUUCCUGGCGUGCUGAUUUGUGAUUUAUGAUAAAAUCACAUUGCCAGGGAUUACCACACAACCCCGACCCAGCCGGCUGCCAUGGU
Get precursor sequence
Structure
        10         20        30          40         50        
UGAUCAUGUUCUUUCAU-   U        A  --         -|  C      GUGAUU 
                  GUC GGGUUGUG GG  GUUCCUGGC GUG UGAUUU      \
                  CAG CCCAACAC CC  UAGGGACCG UAC ACUAAA      U
UGGUACCGUCGGCCGACC   C        A  AU         U^  -      AUAGUA 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-23-P2b_5p*
mirBase accessionNone
Sequence 
0- GGGUUCCUGGCGUGCUGAUUU -21
Get sequence
Mature sequence

Gmo-Mir-23-P2b_3p
mirBase accessionMIMAT0044020
Sequence 
36- AUCACAUUGCCAGGGAUUACCA -58
Get sequence