Mir-23-P2b

MirGeneDB ID

Gmo-Mir-23-P2b

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-23b

Paralogues

Gmo-Mir-23-P1 Gmo-Mir-23-P3 Gmo-Mir-23-P4a

Orthologues

Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cja-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2b Eca-Mir-23-P2 Ete-Mir-23-P2 Gga-Mir-23-P2 Gja-Mir-23-P2 Hsa-Mir-23-P2 Laf-Mir-23-P2 Lch-Mir-23-P2 Loc-Mir-23-P2 Mal-Mir-23-P2b Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmr-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Neu-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pab-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Tni-Mir-23-P2b Xtr-Mir-23-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

contig256800: 176-233 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAUCAUGUUCUUUCAUGUCUGGGUUGUGAGGGUUCCUGGCGUGCUGAUUUGUGAUUUAUGAUAAAAUCACAUUGCCAGGGAUUACCACACAACCCCGACCCAGCCGGCUGCCAUGGU

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Structure

        10         20        30          40         50        
UGAUCAUGUUCUUUCAU-   U        A  --         -|  C      GUGAUU 
                  GUC GGGUUGUG GG  GUUCCUGGC GUG UGAUUU      \
                  CAG CCCAACAC CC  UAGGGACCG UAC ACUAAA      U
UGGUACCGUCGGCCGACC   C        A  AU         U^  -      AUAGUA 
      110       100        90        80         70        60

Deep sequencing

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Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-23-P2b_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCGUGCUGAUUU -21

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Mature sequence

Gmo-Mir-23-P2b_3p

mirBase accession

MIMAT0044020

Sequence

36- AUCACAUUGCCAGGGAUUACCA -58

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