Mir-23-P2b

MirGeneDB ID

Tni-Mir-23-P2b

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-23b

Paralogues

Tni-Mir-23-P1 Tni-Mir-23-P3 Tni-Mir-23-P4a

Orthologues

Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2b Ete-Mir-23-P2 Gga-Mir-23-P2 Gja-Mir-23-P2 Gmo-Mir-23-P2b Hsa-Mir-23-P2 Lch-Mir-23-P2 Loc-Mir-23-P2 Mal-Mir-23-P2b Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Xtr-Mir-23-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

12: 8516226-8516284 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P2b)

Mir-23-P2b 12: 8516226-8516284 [+] UCSC Ensembl
Mir-27-P2b 12: 8516519-8516581 [+] UCSC Ensembl
Mir-24-P2b 12: 8518120-8518178 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCAGCCUGUCCUCUCCUGUCUGGGCUGUGAGGGUUCCUGGCGUGCUGAUUUGUGACCUAUGAUAAAAUCACAUUGCCAGGGAUUACCACACCGCCCAGACCCAGUCAGCCGCCCACAC

Get precursor sequence

Structure

        10        20        30          40         50         
GUCAGCCUGUCCUCUCCU        U   A  --         -|  C      GUGACC 
                  GUCUGGGC GUG GG  GUUCCUGGC GUG UGAUUU      \
                  CAGACCCG CAC CC  UAGGGACCG UAC ACUAAA      U
CACACCCGCCGACUGACC        C   A  AU         U^  -      AUAGUA 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-23-P2b_5p*

mirBase accession

None

Sequence

0- AGGGUUCCUGGCGUGCUGAUUU -22

Get sequence

Mature sequence

Tni-Mir-23-P2b_3p

mirBase accession

MIMAT0002954

Sequence

37- AUCACAUUGCCAGGGAUUACCA -59

Get sequence