Mir-24-P2b

MirGeneDB ID

Tni-Mir-24-P2b

Family name

MIR-24 (all species)

Seed

GGCUCAG

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-24-1

Paralogues

Tni-Mir-24-P1 Tni-Mir-24-P3 Tni-Mir-24-P4a Tni-Mir-24-P4b

Orthologues

Aca-Mir-24-P2 Ami-Mir-24-P2 Bta-Mir-24-P2 Cfa-Mir-24-P2 Cja-Mir-24-P2 Cmi-Mir-24-P2 Cpi-Mir-24-P2 Cpo-Mir-24-P2 Dno-Mir-24-P2 Dre-Mir-24-P2b Eca-Mir-24-P2 Ete-Mir-24-P2 Gga-Mir-24-P2 Gmo-Mir-24-P2b Hsa-Mir-24-P2 Laf-Mir-24-P2 Lch-Mir-24-P2 Loc-Mir-24-P2 Mdo-Mir-24-P2 Mml-Mir-24-P2 Mmr-Mir-24-P2 Mmu-Mir-24-P2 Mun-Mir-24-P2 Neu-Mir-24-P2 Oan-Mir-24-P2 Ocu-Mir-24-P2 Pab-Mir-24-P2 Pbv-Mir-24-P2 Rno-Mir-24-P2 Sha-Mir-24-P2 Spt-Mir-24-P2 Sto-Mir-24-P2 Tgu-Mir-24-P2 Xtr-Mir-24-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

12: 8518120-8518178 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-24-P2b)

Mir-23-P2b 12: 8516226-8516284 [+] UCSC Ensembl
Mir-27-P2b 12: 8516519-8516581 [+] UCSC Ensembl
Mir-24-P2b 12: 8518120-8518178 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGAGGAGGAGUAUCUGGGCUCGGCUUCCUGUGCCUACUGAGCUGAUAUGCAGUUGUACAGAACCACUGGCUCAGUUCAGCAGGAACAGGAGUCCGGUCCGCUCACACGCUGGAGCGCU

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Structure

        10          20        30        40        50        60
GUGAGGAGGAGUAUCUG--| CU   C       G   A         UAU  AGUUGUAC 
                   GG  CGG UUCCUGU CCU CUGAGCUGA   GC        A
                   CC  GCC GAGGACA GGA GACUUGACU   CG        G
UCGCGAGGUCGCACACUCG^ UG   U       A   C         ---  GUCACCAA 
       110       100        90        80           70

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Yes

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-24-P2b_5p*

mirBase accession

None

Sequence

0- GUGCCUACUGAGCUGAUAUGCA -22

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Mature sequence

Tni-Mir-24-P2b_3p

mirBase accession

MIMAT0003066

Sequence

37- UGGCUCAGUUCAGCAGGAACAG -59

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