MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-24-P2b

Family name MIR-24 (all species)
Seed GGCUCAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-24-1
Paralogues Tni-Mir-24-P1  Tni-Mir-24-P3  Tni-Mir-24-P4a  Tni-Mir-24-P4b 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cmi-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Dre-Mir-24-P2b  Ete-Mir-24-P2  Gga-Mir-24-P2  Gmo-Mir-24-P2b  Hsa-Mir-24-P2  Lch-Mir-24-P2  Loc-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Xtr-Mir-24-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 12: 8518120-8518178 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P2b)		 Mir-23-P2b 12: 8516226-8516284 [+] UCSC Ensembl
Mir-27-P2b 12: 8516519-8516581 [+] UCSC Ensembl
Mir-24-P2b 12: 8518120-8518178 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAGGAGGAGUAUCUGGGCUCGGCUUCCUGUGCCUACUGAGCUGAUAUGCAGUUGUACAGAACCACUGGCUCAGUUCAGCAGGAACAGGAGUCCGGUCCGCUCACACGCUGGAGCGCU
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Structure
        10          20        30        40        50        60
GUGAGGAGGAGUAUCUG--| CU   C       G   A         UAU  AGUUGUAC 
                   GG  CGG UUCCUGU CCU CUGAGCUGA   GC        A
                   CC  GCC GAGGACA GGA GACUUGACU   CG        G
UCGCGAGGUCGCACACUCG^ UG   U       A   C         ---  GUCACCAA 
       110       100        90        80           70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU Yes
MotifsNo
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-24-P2b_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGAGCUGAUAUGCA -22
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Mature sequence

Tni-Mir-24-P2b_3p
mirBase accessionMIMAT0003066
Sequence 
37- UGGCUCAGUUCAGCAGGAACAG -59
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