MirGeneDB ID | Tni-Mir-24-P4b |
Family name |
MIR-24 (all species) |
Seed |
GGCUCAG |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-24-P1
Tni-Mir-24-P2b
Tni-Mir-24-P3
Tni-Mir-24-P4a
|
Orthologues |
Gmo-Mir-24-P4b
Lch-Mir-24-P4
Loc-Mir-24-P4
Mal-Mir-24-P4b
Sto-Mir-24-P4
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
15_random: 2810523-2810582 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGUUUUUGACUGUUUGAAGUUUUACUCUUGUGCCUACUGAACUGGAUUCAGUGUGUUUGUGUAAAACUGGCUCAGUCCAGCAGGAACAAGAGUGACAACUAAUGUGACGGCAGCAGGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGUUUUUGACUGUUUGA- -| G A A AU GUGUUU
AGUU UUACUCUUGU CCU CUG ACUGG UCAGU \
UCAA AGUGAGAACA GGA GAC UGACU GGUCA G
CAGGACGACGGCAGUGUAA C^ A C C C- AAAUGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Tni-Mir-24-P4b_5p* |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAACUGGAUUCAGUG -24
Get sequence
|
Mature sequence |
Tni-Mir-24-P4b_3p |
mirBase accession | None |
Sequence |
38- UGGCUCAGUCCAGCAGGAACAA -60
Get sequence
|