MirGeneDB ID | Loc-Mir-24-P4 |
Family name |
MIR-24 (all species) |
Seed |
GGCUCAG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-24-P1
Loc-Mir-24-P2
Loc-Mir-24-P3
|
Orthologues |
Dre-Mir-24-P4a
Gmo-Mir-24-P4a
Gmo-Mir-24-P4b
Lch-Mir-24-P4
Mal-Mir-24-P4a
Mal-Mir-24-P4b
Sto-Mir-24-P4
Tni-Mir-24-P4a
Tni-Mir-24-P4b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG19: 5781223-5781282 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACAUGUUGCUGCUGGGGCUGUGACCUCCCGUGCCUACUGAACUGAUAUCAGUGUGUGUACGGAAUACUGGCUCAGUUCAGCAGGAACAGGAGUUAAGCCCAACUGUACACCAUUACCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GACAUGUUGCUGCUGGG----| G C C G A UA UGUGUGU
GCU UGAC UCC GU CCU CUGAACUGA UCAG \
CGA AUUG AGG CA GGA GACUUGACU GGUC A
CUCCAUUACCACAUGUCAACC^ - - A A C C- AUAAGGC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on both arms. |
3' NTU |
Yes
|
Motifs | UGUG in loop |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-24-P4_5p* |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAACUGAUAUCAG -22
Get sequence
|
Mature sequence |
Loc-Mir-24-P4_3p |
mirBase accession | None |
Sequence |
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence
|