MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-24-P4a

Family name MIR-24 (all species)
Seed GGCUCAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-24-4
Paralogues Dre-Mir-24-P1  Dre-Mir-24-P2a  Dre-Mir-24-P2b  Dre-Mir-24-P3 
Orthologues Gmo-Mir-24-P4a  Lch-Mir-24-P4  Loc-Mir-24-P4  Mal-Mir-24-P4a  Sto-Mir-24-P4  Tni-Mir-24-P4a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr22: 5307502-5307561 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P4a)		 Mir-23-P4a chr22: 5293226-5293289 [+] UCSC Ensembl
Mir-27-P4a chr22: 5299972-5300035 [+] UCSC Ensembl
Mir-24-P4a chr22: 5307502-5307561 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGAAACACGACUGAGGGCUGUUCCCACUUGUGCCUGCUAAACUGGUAUCAGUAUGUUGAUUUAGUGCUGGCUCAGUUCAGCAGGAACAGGUGUGAAGUCCUCUACUCUCCUCCAAUCAG
Get precursor sequence
Structure
        10        20          30        40        50          
GAGAAACACGACUGAGGGCUG--|  C       G      A      UA     AUGUUG 
                       UUC CACUUGU CCUGCU AACUGG  UCAGU      \
                       AAG GUGGACA GGACGA UUGACU  GGUCG      A
GACUAACCUCCUCUCAUCUCCUG^  U       A      C      C-     UGAUUU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-24-P4a_5p*
mirBase accessionNone
Sequence 
0- GUGCCUGCUAAACUGGUAUCAGU -23
Get sequence
Mature sequence

Dre-Mir-24-P4a_3p
mirBase accessionMIMAT0001792
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence
Proposed targets TargetScanFish: dre-miR-24