MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-24-P2a

Family name MIR-24 (all species)
Seed GGCUCAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-24-1
Paralogues Dre-Mir-24-P1  Dre-Mir-24-P2b  Dre-Mir-24-P3  Dre-Mir-24-P4a 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cmi-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Ete-Mir-24-P2  Gga-Mir-24-P2  Hsa-Mir-24-P2  Lch-Mir-24-P2  Loc-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Xtr-Mir-24-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr10: 15960847-15960904 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P2a)
Mir-23-P2a chr10: 15954588-15954651 [+] UCSC Ensembl
Mir-27-P2a chr10: 15954740-15954804 [+] UCSC Ensembl
Mir-24-P2a chr10: 15960847-15960904 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGUGUGUCUCAUCAGGACCUGAGCUCCGGUGCCUUCUGAGCUGAUAUCAGUUGUAGUAAAUCACUGGCUCAGUUCAGCAGGAACAGGAGUGUGGCCCCUCCACAAAGAAGCACACA
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Structure
        10           20        30        40        50         
GUUGUGUGUCUCAUCAGGA---| UGA     G  G   U         UA     UGUAG 
                      CC   GCUCC GU CCU CUGAGCUGA  UCAGU     \
                      GG   UGAGG CA GGA GACUUGACU  GGUCA     U
ACACACGAAGAAACACCUCCCC^ UG-     A  A   C         C-     CUAAA 
      110       100         90        80        70         60
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsUGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-24-P2a_5p*

mirBase accessionNone
Sequence
0- GUGCCUUCUGAGCUGAUAUCAGU -23
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Mature sequence

Dre-Mir-24-P2a_3p

mirBase accessionMIMAT0001792
Sequence
36- UGGCUCAGUUCAGCAGGAACAG -58
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Proposed targets TargetScanFish: dre-miR-24