MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-24-P2

Family name MIR-24 (all species)
Seed GGCUCAG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-24-P1  Lch-Mir-24-P3  Lch-Mir-24-P4 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cja-Mir-24-P2  Cmi-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Dre-Mir-24-P2a  Dre-Mir-24-P2b  Eca-Mir-24-P2  Ete-Mir-24-P2  Gga-Mir-24-P2  Gmo-Mir-24-P2b  Hsa-Mir-24-P2  Laf-Mir-24-P2  Loc-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmr-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Neu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pab-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Tni-Mir-24-P2b  Xla-Mir-24-P2c  Xla-Mir-24-P2d  Xtr-Mir-24-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126823.1: 175961-176020 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCCAGACUGUUGGUGGACUCGACCUCCUGUGCCUACUGAGCUGAUAUCAGUUCUUAUUUAACAUACUGGCUCAGUUCAGCAGGAACAGGAGUUGAGCCCUAAAGCAAAAAACACAAAU
Get precursor sequence
Structure
        10           20        30        40        50          
AUUCCAGACUGUUGGUGGA---|     C      G   A         UA     UCUUAU 
                      CUCGAC UCCUGU CCU CUGAGCUGA  UCAGU      \
                      GAGUUG AGGACA GGA GACUUGACU  GGUCA      U
UAAACACAAAAAACGAAAUCCC^     -      A   C         C-     UACAAU 
.       110       100         90        80         70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-24-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- GUGCCUACUGAGCUGAUAUCAGU -23
Get sequence
Mature sequence

Lch-Mir-24-P2_3p (predicted)

mirBase accessionNone
Sequence
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence