MirGeneDB ID | Cmi-Mir-24-P2 |
Family name |
MIR-24 (all species) |
Seed |
GGCUCAG |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-24-P3
|
Orthologues |
Aca-Mir-24-P2
Ami-Mir-24-P2
Bta-Mir-24-P2
Cfa-Mir-24-P2
Cja-Mir-24-P2
Cpi-Mir-24-P2
Cpo-Mir-24-P2
Dno-Mir-24-P2
Dre-Mir-24-P2a
Dre-Mir-24-P2b
Eca-Mir-24-P2
Ete-Mir-24-P2
Gga-Mir-24-P2
Gmo-Mir-24-P2b
Hsa-Mir-24-P2
Laf-Mir-24-P2
Lch-Mir-24-P2
Loc-Mir-24-P2
Mdo-Mir-24-P2
Mml-Mir-24-P2
Mmr-Mir-24-P2
Mmu-Mir-24-P2
Mun-Mir-24-P2
Neu-Mir-24-P2
Oan-Mir-24-P2
Ocu-Mir-24-P2
Pab-Mir-24-P2
Pbv-Mir-24-P2
Rno-Mir-24-P2
Sha-Mir-24-P2
Spt-Mir-24-P2
Sto-Mir-24-P2
Tgu-Mir-24-P2
Tni-Mir-24-P2b
Xla-Mir-24-P2c
Xla-Mir-24-P2d
Xtr-Mir-24-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635929.1: 200598-200657 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUUGAAGUUUGGAUUGGACCUGAUCUCUUGUGCCUACUGAGCUGAUAACAGUUACUAUCUUACAUACUGGCUCAGUUCAGCAGGAACAGGAGUUGGGCCCCUACACAAAAUACACUACA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUUGAAGUUUGGAUUGGA---| UG U G A UAA UACUAU
CC A CUCUUGU CCU CUGAGCUGA CAGU \
GG U GAGGACA GGA GACUUGACU GUCA C
ACAUCACAUAAAACACAUCCCC^ GU - A C CG- UACAUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on the 5p arm. |
3' NTU |
Yes
|
Motifs | No |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-24-P2_5p* |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAGCUGAUAACAGU -23
Get sequence
|
Mature sequence |
Cmi-Mir-24-P2_3p |
mirBase accession | None |
Sequence |
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence
|