MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-24-P2 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cja-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Eca-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Laf-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmr-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Neu-Mir-24-P3  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pab-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635928.1: 356764-356823 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACAACUGCAAGAACUGGGCUCAAUCUUCUGUGCCUACUGAGCUGAUAACAGUUGAUAUUGUUUGCACUGGCUCAGUUCAGCAGGAACAGGAGUUGAGCCCCUUUGACCACGUGAGAAAG
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Structure
        10           20        30        40        50          
CACAACUGCAAGAACUG---|      U       G   A         UAA    UGAUAU 
                    GGCUCAA CUUCUGU CCU CUGAGCUGA   CAGU      \
                    CCGAGUU GAGGACA GGA GACUUGACU   GUCA      U
GAAAGAGUGCACCAGUUUCC^      -       A   C         CG-    CGUUUG 
.       110       100         90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-24-P3_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGAGCUGAUAACAGU -23
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Mature sequence

Cmi-Mir-24-P3_3p
mirBase accessionNone
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
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