MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-24-2
Paralogues Ocu-Mir-24-P2 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Oan-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chrUn0990: 23718-23778 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3)
Mir-181-P2c chrUn0990: 3930-3992 [-] UCSC Ensembl
Mir-181-P1c chrUn0990: 4071-4131 [-] UCSC Ensembl
Mir-24-P3 chrUn0990: 23718-23778 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGCCCGGCCGCCCUGGGCUCCGCCUCCCGUACCUACUGAGCUGAAACACAGUUGAUGUCGUGGACACUGGCUCAGUUCAGCAGGAACAGGAGUCGAGCCCGCUUGGACGCUGGCGGCCG
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Structure
        10           20        30        40        50        60 
GCCGCCCGGCCGCCCUG---|    C C    C  A   A         AACA    UGAUGU 
                    GGCUC G CUCC GU CCU CUGAGCUGA    CAGU      \
                    CCGAG C GAGG CA GGA GACUUGACU    GUCA      C
GCCGGCGGUCGCAGGUUCGC^    - U    A  A   C         CG--    CAGGUG 
 .       110       100         90        80          70
Deep sequencing
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CommentAlthough not well supported by deep read data all taxa sequenced in this study show the same read pattern and better more deeply sequenced vertebrate taxa are all clearly Group 2 miRNAs suggesting that this too is likely a Group 2 miRNA.
3' NTU Yes
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-24-P3_5p*

mirBase accessionMIMAT0048132
Sequence
0- GUACCUACUGAGCUGAAACACAGU -24
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Mature sequence

Ocu-Mir-24-P3_3p

mirBase accessionMIMAT0048131
Sequence
39- UGGCUCAGUUCAGCAGGAACAG -61
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