MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-24-2
Paralogues Ami-Mir-24-P2 
Orthologues Aca-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cja-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Eca-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Laf-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmr-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Neu-Mir-24-P3  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pab-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713323.1: 200859-200919 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-24-P3)		 Mir-23-P3 NW_017713323.1: 200394-200456 [+] UCSC
Mir-27-P3 NW_017713323.1: 200584-200646 [+] UCSC
Mir-24-P3 NW_017713323.1: 200859-200919 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCUGGGCAGCCCCUCUGGGCCCUGCCUCCGGUGCCUACUGAGCUGAUACUCAGUUGCUUUGGUUUAAACUGGCUCAGUUCAGCAGGAACAGGAGUCUGGCUCCAGCUGCGCCAGCCACCCA
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Structure
        10           20        30        40        50        60 
CCUGGGCAGCCCCUCUG---|   CUGC    G  G   A         UAC     UGCUUU 
                    GGCC    CUCC GU CCU CUGAGCUGA   UCAGU      \
                    UCGG    GAGG CA GGA GACUUGACU   GGUCA      G
ACCCACCGACCGCGUCGACC^   UCU-    A  A   C         C--     AAUUUG 
 .       110       100         90        80          70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-24-P3_5p*
mirBase accessionMIMAT0038063
Sequence 
0- GUGCCUACUGAGCUGAUACUCAGU -24
Get sequence
Mature sequence

Ami-Mir-24-P3_3p
mirBase accessionMIMAT0038062
Sequence 
39- UGGCUCAGUUCAGCAGGAACAG -61
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