MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-24-2
Paralogues Cpo-Mir-24-P2 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_42: 12931984-12932043 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-24-P3)
Mir-181-P1c scaffold_42: 12912419-12912479 [-] UCSC
Mir-23-P3 scaffold_42: 12931646-12931704 [+] UCSC
Mir-27-P3 scaffold_42: 12931848-12931908 [+] UCSC
Mir-24-P3 scaffold_42: 12931984-12932043 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCACUACUGCUGGGCCGGGCUCUGCCUCCUGUACCUACUGAGCUGAAACACAGUUGAUUUGUGCAGACUGGCUCAGUUCAGCAGGAACAGGGGUCAAGUCCCCUGGAGCCCGCUGCUGGC
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Structure
        10           20        30        40        50        60
CCACUACUGCUGGGCCG---|   CU   U     A   A         AACA    UGAUU 
                    GGCU  GCC CCUGU CCU CUGAGCUGA    CAGU     U
                    CUGA  UGG GGACA GGA GACUUGACU    GUCA     G
CGGUCGUCGCCCGAGGUCCC^   AC   -     A   C         CG--    GACGU 
.       110       100         90        80          70
Deep sequencing
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CommentAlthough not well supported by deep read data all taxa sequenced in this study show the same read pattern and better and more deeply sequenced vertebrate taxa are all clearly Group 2 miRNAs suggesting that this too is likely a Group 2 miRNA.
3' NTU Yes
MotifsNo
Tissue expression
 +
To
Star sequence

Cpo-Mir-24-P3_5p*

mirBase accessionMIMAT0046882
Sequence
0- GUACCUACUGAGCUGAAACACAGU -24
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Mature sequence

Cpo-Mir-24-P3_3p

mirBase accessionMIMAT0046881
Sequence
38- UGGCUCAGUUCAGCAGGAACAG -60
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