Mir-24-P3

MirGeneDB ID

Gja-Mir-24-P3

Family name

MIR-24 (all species)

Seed

GGCUCAG

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-24-P3 Ami-Mir-24-P3 Bta-Mir-24-P3 Cfa-Mir-24-P3 Cja-Mir-24-P3 Cmi-Mir-24-P3 Cpi-Mir-24-P3 Cpo-Mir-24-P3 Dno-Mir-24-P3 Dre-Mir-24-P3 Eca-Mir-24-P3 Ete-Mir-24-P3 Gga-Mir-24-P3 Gmo-Mir-24-P3 Hsa-Mir-24-P3 Laf-Mir-24-P3 Lch-Mir-24-P3 Loc-Mir-24-P3 Mdo-Mir-24-P3 Mml-Mir-24-P3 Mmr-Mir-24-P3 Mmu-Mir-24-P3 Mun-Mir-24-P3a Mun-Mir-24-P3b Neu-Mir-24-P3 Oan-Mir-24-P3 Ocu-Mir-24-P3 Pab-Mir-24-P3 Pbv-Mir-24-P3 Rno-Mir-24-P3 Sha-Mir-24-P3 Sto-Mir-24-P3 Tgu-Mir-24-P3 Tni-Mir-24-P3 Xla-Mir-24-P3c Xla-Mir-24-P3d Xtr-Mir-24-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015175453.1: 135655-135714 [-]

Precursor
(pre-Mir +30nt flank)

ACGCGACGGUCCUUCUGGGUUUCGACUCCCGUGCCUACUGAGCUGAUACUCAGUCGCUUUGAACACACUGGCUCAGUUCAGAAGGAACAGGAGGCAGGGCUAGGCCUCCCAGACGGCACA

Get precursor sequence

Structure

        10          20        30        40        50        60
ACGCGACGGUCCUUCUG--|    CGA    C  G   A         UAC     CGCUU 
                   GGUUU   CUCC GU CCU CUGAGCUGA   UCAGU     U
                   UCGGG   GAGG CA GGA GACUUGACU   GGUCA     G
ACACGGCAGACCCUCCGGA^    ACG    A  A   A         C--     CACAA 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

Comment

There is likely a 1 nt mismatch at position 14 on the 3p arm between the source of the genome (G. japonicus) and the source of the reads (C. variegatus) accounting for the paucity of reads of the mature miRNA.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gja-Mir-24-P3_5p*

mirBase accession

None

Sequence

0- GUGCCUACUGAGCUGAUACUCAGU -24

Get sequence

Mature sequence

Gja-Mir-24-P3_3p

mirBase accession

None

Sequence

38- UGGCUCAGUUCAGAAGGAACAG -60

Get sequence