MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-24-P1  Sto-Mir-24-P2  Sto-Mir-24-P4 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cja-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Eca-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Laf-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmr-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Neu-Mir-24-P3  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pab-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01001728.1: 147134-147193 [-]
Precursor
(pre-Mir +30nt flank)
AACAACUGGAAGAAGCGGGCUCAAUCUUCUGUGCCUACUGAGCUGAUAACAGUUGAUGUAGCCUGCACUGGCUCAGUUCAGCAGGAACAGAAGUUGUUCCUCUUUGACUACCUGAAAUUC
Get precursor sequence
Structure
        10           20        30        40        50          
AACAACUGGAAGAAGCG---| CU   U       G   A         UAA    UGAUGU 
                    GG  CAA CUUCUGU CCU CUGAGCUGA   CAGU      \
                    CC  GUU GAAGACA GGA GACUUGACU   GUCA      A
CUUAAAGUCCAUCAGUUUCU^ UU   -       A   C         CG-    CGUCCG 
.       110       100         90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sto-Mir-24-P3_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGAGCUGAUAACAGU -23
Get sequence
Mature sequence

Sto-Mir-24-P3_3p
mirBase accessionNone
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence