MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-24a-2
Paralogues Gmo-Mir-24-P1  Gmo-Mir-24-P2b  Gmo-Mir-24-P4a  Gmo-Mir-24-P4b 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cja-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Eca-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Hsa-Mir-24-P3  Laf-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmr-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Neu-Mir-24-P3  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pab-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_4493: 201873-201931 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCUACUGACCCGGCCGGGCUGGGCUCCUGUGCCUGCUGUACUGAUAAUCAGUGUGCGACGUCAGCUGGCUCAGUUCAGCAGGAACAGAGGACUGGUCUCACUGCUCCAAACCAUGGG
Get precursor sequence
Structure
        10          20        30        40        50          
UCCCUACUGACCCGGCC--|   UG G UC    G       U     UAA     GUGCG 
                   GGGC  G C  CUGU CCUGCUG ACUGA   UCAGU     \
                   UCUG  C G  GACA GGACGAC UGACU   GGUCG     A
GGGUACCAAACCUCGUCAC^   GU A GA    A       U     C--     ACUGC 
       110       100        90        80          70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-24-P3_5p*
mirBase accessionMIMAT0044292
Sequence 
0- GUGCCUGCUGUACUGAUAAUCAGU -24
Get sequence
Mature sequence

Gmo-Mir-24-P3_3p
mirBase accessionMIMAT0044048
Sequence 
37- UGGCUCAGUUCAGCAGGAACAG -59
Get sequence