MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-24-P2b

Family name MIR-24 (all species)
Seed GGCUCAG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-24a-3
Paralogues Gmo-Mir-24-P1  Gmo-Mir-24-P3  Gmo-Mir-24-P4a  Gmo-Mir-24-P4b 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cja-Mir-24-P2  Cmi-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Dre-Mir-24-P2b  Eca-Mir-24-P2  Ete-Mir-24-P2  Gga-Mir-24-P2  Hsa-Mir-24-P2  Laf-Mir-24-P2  Lch-Mir-24-P2  Loc-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmr-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Neu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pab-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Tni-Mir-24-P2b  Xtr-Mir-24-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1288: 2079157-2079215 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCAGUCCGAGACACGGGCCUGGGACUCCUGUGCCUACUGAGCUGAUUAUCAGUCCUACAGAACCACUGGCUCAGUUCAGCAGGAACAGGAGUCAGGCCUGCUCCUCACCGACCCUGGG
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Structure
        10            20        30        40        50          
CGCAGUCCGAGACACGG----|   GG         G   A         UUA    UCCUAC 
                     GCCU  GACUCCUGU CCU CUGAGCUGA   UCAG      \
                     CGGA  CUGAGGACA GGA GACUUGACU   GGUC      A
GGGUCCCAGCCACUCCUCGUC^   --         A   C         C--    ACCAAG 
       110       100          90        80          70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-24-P2b_5p*
mirBase accessionMIMAT0044116
Sequence 
0- GUGCCUACUGAGCUGAUUAUCAG -23
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Mature sequence

Gmo-Mir-24-P2b_3p
mirBase accessionMIMAT0044048
Sequence 
37- UGGCUCAGUUCAGCAGGAACAG -59
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