MirGeneDB ID | Pab-Mir-24-P2 |
---|---|
Family name | MIR-24 (all species) |
Seed | GGCUCAG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-24-P3 |
Orthologues | Aca-Mir-24-P2 Ami-Mir-24-P2 Bta-Mir-24-P2 Cfa-Mir-24-P2 Cja-Mir-24-P2 Cmi-Mir-24-P2 Cpi-Mir-24-P2 Cpo-Mir-24-P2 Dno-Mir-24-P2 Dre-Mir-24-P2a Dre-Mir-24-P2b Eca-Mir-24-P2 Ete-Mir-24-P2 Gga-Mir-24-P2 Gmo-Mir-24-P2b Hsa-Mir-24-P2 Laf-Mir-24-P2 Lch-Mir-24-P2 Loc-Mir-24-P2 Mdo-Mir-24-P2 Mml-Mir-24-P2 Mmr-Mir-24-P2 Mmu-Mir-24-P2 Mun-Mir-24-P2 Neu-Mir-24-P2 Oan-Mir-24-P2 Ocu-Mir-24-P2 Pbv-Mir-24-P2 Rno-Mir-24-P2 Sha-Mir-24-P2 Spt-Mir-24-P2 Sto-Mir-24-P2 Tgu-Mir-24-P2 Tni-Mir-24-P2b Xla-Mir-24-P2c Xla-Mir-24-P2d Xtr-Mir-24-P2 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054692.2: 86216239-86216298 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUCCGGGCUGUCGAUUGGACCCGCCCUCCGGUGCCUACUGAGCUGAUAUCAGUUCUCAUUUUACACACUGGCUCAGUUCAGCAGGAACAGGAGUCGAGCCCUUGAGCAAAAAGCCUUCGUGet precursor sequence |
Structure | 10 20 30 40 50 CUCCGGGCUGUCGAUUGGACC---| CC G G A UA UCUCAU CG CUCC GU CCU CUGAGCUGA UCAGU \ GC GAGG CA GGA GACUUGACU GGUCA U UGCUUCCGAAAAACGAGUUCCCGA^ U- A A C C- CACAUU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Yes |
Motifs | No |
Star sequence | Pab-Mir-24-P2_5p* |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAGCUGAUAUCAGU -23
Get sequence
|
Mature sequence | Pab-Mir-24-P2_3p |
mirBase accession | None |
Sequence |
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence
|