Mir-24-P2d

MirGeneDB ID

Xla-Mir-24-P2d

Family name

MIR-24 (all species)

Seed

GGCUCAG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-24a-1

Paralogues

Xla-Mir-24-P2c Xla-Mir-24-P3c Xla-Mir-24-P3d

Orthologues

Aca-Mir-24-P2 Ami-Mir-24-P2 Bta-Mir-24-P2 Cfa-Mir-24-P2 Cja-Mir-24-P2 Cmi-Mir-24-P2 Cpi-Mir-24-P2 Cpo-Mir-24-P2 Dno-Mir-24-P2 Eca-Mir-24-P2 Ete-Mir-24-P2 Gga-Mir-24-P2 Hsa-Mir-24-P2 Laf-Mir-24-P2 Lch-Mir-24-P2 Loc-Mir-24-P2 Mdo-Mir-24-P2 Mml-Mir-24-P2 Mmr-Mir-24-P2 Mmu-Mir-24-P2 Mun-Mir-24-P2 Neu-Mir-24-P2 Oan-Mir-24-P2 Ocu-Mir-24-P2 Pab-Mir-24-P2 Pbv-Mir-24-P2 Rno-Mir-24-P2 Sha-Mir-24-P2 Spt-Mir-24-P2 Sto-Mir-24-P2 Tgu-Mir-24-P2 Xtr-Mir-24-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030725.1: 110864858-110864916 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUCUACACAUAUGGUGGACCUGUCCUCUUGUGCCUACUGAACUGAUAUCAGUUCUAUCUUACACACUGGCUCAGUUCAGCAGGAACAGGAGUCUGGCCCUUGAGCAAAGCGCUGACAA

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Structure

        10           20        30        40        50         
GUUCUACACAUAUGGUGGA---| UGUC       G   A         UA     UCUAU 
                      CC    CUCUUGU CCU CUGAACUGA  UCAGU     C
                      GG    GAGGACA GGA GACUUGACU  GGUCA     U
AACAGUCGCGAAACGAGUUCCC^ UCU-       A   C         C-     CACAU 
       110       100         90        80         70        60

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-24-P2d_5p*

mirBase accession

MIMAT0046550

Sequence

0- GUGCCUACUGAACUGAUAUCAGU -23

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Mature sequence

Xla-Mir-24-P2d_3p

mirBase accession

MIMAT0046551

Sequence

37- UGGCUCAGUUCAGCAGGAACAG -59

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