MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-24-P3c

Family name MIR-24 (all species)
Seed GGCUCAG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-24b-1
Paralogues Xla-Mir-24-P2c  Xla-Mir-24-P2d  Xla-Mir-24-P3d 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cja-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Eca-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Laf-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmr-Mir-24-P3  Mmu-Mir-24-P3  Neu-Mir-24-P3  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pab-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xtr-Mir-24-P3 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 133946953-133947013 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3c)		 Mir-23-P3c NC_030728.1: 133946064-133946127 [+] UCSC Ensembl
Mir-24-P3c NC_030728.1: 133946953-133947013 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAAUAAGCGCCUGACUGGCUCCACCUCCCGUAUCUACUGGGCUGAUAAUCAGUGGUUAUAACUUCCCCUGGCUCAGUUCAGCAGGACAGGAGUUGCAGCCAAACAUCUGCCAACCAACUC
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Structure
        10           20        30        40        50        60 
GUAAUAAGCGCCUGACU---|   C  C    C  A   A         UAA    UGGUUAU 
                    GGCU CA CUCC GU UCU CUGGGCUGA   UCAG       \
                    CCGA GU GAGG CA GGA GACUUGACU   GGUC       A
CUCAACCAACCGUCUACAAA^   C  U    A  -   C         C--    CCCUUCA 
 .       110       100        90         80          70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-24-P3c_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUAUCUACUGGGCUGAUAAUCAGU -24
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Mature sequence

Xla-Mir-24-P3c_3p
mirBase accessionMIMAT0011146
Sequence 
39- UGGCUCAGUUCAGCAGGACAGG -61
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