MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-24-1
Paralogues Aca-Mir-24-P2 
Orthologues Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cja-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Eca-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Laf-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmr-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Neu-Mir-24-P3  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pab-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)		 2: 29157652-29157711 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3)		 Mir-24-P3 2: 29157652-29157711 [-] UCSC Ensembl
Mir-27-P3 2: 29157937-29157998 [-] UCSC Ensembl
Mir-23-P3 2: 29158348-29158408 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGGCUUCCUCUGCAGGGCUUGGCCUUCCGUGCCUACUGAGCUGAUACUCAGUUGCUUUAGAUAAACUGGCUCAGUUCAGCAGGAACAGGAGUCCAGCCCAGUCCAUGCAAGGACUCAA
Get precursor sequence
Structure
        10           20        30        40        50        60
CCUGGCUUCCUCUGCAG---|   U  C    C  G   A         UAC     UGCUU 
                    GGCU GG CUUC GU CCU CUGAGCUGA   UCAGU     U
                    CCGA CC GAGG CA GGA GACUUGACU   GGUCA     A
AACUCAGGAACGUACCUGAC^   -  U    A  A   C         C--     AAUAG 
.       110       100         90        80          70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
-   +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-24-P3_5p*
mirBase accessionMIMAT0021899
Sequence 
0- GUGCCUACUGAGCUGAUACUCAGU -24
Get sequence
Mature sequence

Aca-Mir-24-P3_3p
mirBase accessionMIMAT0021900
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence