MirGeneDB ID | Cja-Mir-24-P3 |
Family name |
MIR-24 (all species) |
Seed |
GGCUCAG |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-24-P2
|
Orthologues |
Aca-Mir-24-P3
Ami-Mir-24-P3
Bta-Mir-24-P3
Cfa-Mir-24-P3
Cmi-Mir-24-P3
Cpi-Mir-24-P3
Cpo-Mir-24-P3
Dno-Mir-24-P3
Dre-Mir-24-P3
Eca-Mir-24-P3
Ete-Mir-24-P3
Gga-Mir-24-P3
Gja-Mir-24-P3
Gmo-Mir-24-P3
Hsa-Mir-24-P3
Laf-Mir-24-P3
Lch-Mir-24-P3
Loc-Mir-24-P3
Mdo-Mir-24-P3
Mml-Mir-24-P3
Mmr-Mir-24-P3
Mmu-Mir-24-P3
Mun-Mir-24-P3a
Mun-Mir-24-P3b
Neu-Mir-24-P3
Oan-Mir-24-P3
Ocu-Mir-24-P3
Pab-Mir-24-P3
Pbv-Mir-24-P3
Rno-Mir-24-P3
Sha-Mir-24-P3
Sto-Mir-24-P3
Tgu-Mir-24-P3
Tni-Mir-24-P3
Xla-Mir-24-P3c
Xla-Mir-24-P3d
Xtr-Mir-24-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 12279644-12279703 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGCCCGGCCUCCCUGGGCUCUGCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUUGUGCACACUGGCUCAGUUCAGCAGGAACAGGGGUCAAGCCCGCUUGGAGCCCGCAGCCCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGCCCGGCCUCCCUG---| CU U C G A AACA UGGUU
GGCU GCC CC GU CCU CUGAGCUGA CAGU U
CCGA UGG GG CA GGA GACUUGACU GUCA G
CCCCGACGCCCGAGGUUCGC^ AC - A A C CG-- CACGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cja-Mir-24-P3_5p* |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAGCUGAAACACAGU -24
Get sequence
|
Mature sequence |
Cja-Mir-24-P3_3p |
mirBase accession | None |
Sequence |
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence
|