MirGeneDB ID | Laf-Mir-24-P3 |
---|---|
Family name | MIR-24 (all species) |
Seed | GGCUCAG |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-24-P2 |
Orthologues | Aca-Mir-24-P3 Ami-Mir-24-P3 Bta-Mir-24-P3 Cfa-Mir-24-P3 Cja-Mir-24-P3 Cmi-Mir-24-P3 Cpi-Mir-24-P3 Cpo-Mir-24-P3 Dno-Mir-24-P3 Dre-Mir-24-P3 Eca-Mir-24-P3 Ete-Mir-24-P3 Gga-Mir-24-P3 Gja-Mir-24-P3 Gmo-Mir-24-P3 Hsa-Mir-24-P3 Lch-Mir-24-P3 Loc-Mir-24-P3 Mdo-Mir-24-P3 Mml-Mir-24-P3 Mmr-Mir-24-P3 Mmu-Mir-24-P3 Mun-Mir-24-P3a Mun-Mir-24-P3b Neu-Mir-24-P3 Oan-Mir-24-P3 Ocu-Mir-24-P3 Pab-Mir-24-P3 Pbv-Mir-24-P3 Rno-Mir-24-P3 Sha-Mir-24-P3 Sto-Mir-24-P3 Tgu-Mir-24-P3 Tni-Mir-24-P3 Xla-Mir-24-P3c Xla-Mir-24-P3d Xtr-Mir-24-P3 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010053.1: 29291382-29291441 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUCCCCGGGCUCCCCUGGGCUCUGCCUCCCGUGCCUACUGAGCUGAAACACAGUUGAUUUGUGCAGACUGGCUCAGUUCAGCAGGAACAGGAGUCUCGCCCUCUCGGAGCCCAUGGCCCCGet precursor sequence |
Structure | 10 20 30 40 50 CUCCCCGGGCUCCCCUG---| UCUGC C G A AA CAGUUGAU GGC CUCC GU CCU CUGAGCUGA CA U CCG GAGG CA GGA GACUUGACU GU U CCCCGGUACCCGAGGCUCUC^ CUCU- A A C CG CAGACGUG . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Yes |
Motifs | No |
Star sequence | Laf-Mir-24-P3_5p* |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAGCUGAAACACA -22
Get sequence
|
Mature sequence | Laf-Mir-24-P3_3p |
mirBase accession | None |
Sequence |
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence
|