Mir-24-P3

MirGeneDB ID

Eca-Mir-24-P3

Family name

MIR-24 (all species)

Seed

GGCUCAG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-24-1

Paralogues

Eca-Mir-24-P2

Orthologues

Aca-Mir-24-P3 Ami-Mir-24-P3 Bta-Mir-24-P3 Cfa-Mir-24-P3 Cja-Mir-24-P3 Cmi-Mir-24-P3 Cpi-Mir-24-P3 Cpo-Mir-24-P3 Dno-Mir-24-P3 Dre-Mir-24-P3 Ete-Mir-24-P3 Gga-Mir-24-P3 Gja-Mir-24-P3 Gmo-Mir-24-P3 Hsa-Mir-24-P3 Laf-Mir-24-P3 Lch-Mir-24-P3 Loc-Mir-24-P3 Mdo-Mir-24-P3 Mml-Mir-24-P3 Mmr-Mir-24-P3 Mmu-Mir-24-P3 Mun-Mir-24-P3a Mun-Mir-24-P3b Neu-Mir-24-P3 Oan-Mir-24-P3 Ocu-Mir-24-P3 Pab-Mir-24-P3 Pbv-Mir-24-P3 Rno-Mir-24-P3 Sha-Mir-24-P3 Sto-Mir-24-P3 Tgu-Mir-24-P3 Tni-Mir-24-P3 Xla-Mir-24-P3c Xla-Mir-24-P3d Xtr-Mir-24-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009154.1: 46233360-46233419 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-24-P3)

Mir-23-P3 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Mir-27-P3 CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Mir-24-P3 CM009154.1: 46233360-46233419 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCCCCGUGCCUCCCCGGGCUCUGCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUUGUGCAGACUGGCUCAGUUCAGCAGGAACAGGAGUCAAGCCCCCUUGGAGCCUGCAGCCCC

Get precursor sequence

Structure

        10           20        30        40        50        60
UGCCCCGUGCCUCCCCG---|   C  C    C  G   A         AACA    UGGUU 
                    GGCU UG CUCC GU CCU CUGAGCUGA    CAGU     U
                    CCGA AC GAGG CA GGA GACUUGACU    GUCA     G
CCCCGACGUCCGAGGUUCCC^   -  U    A  A   C         CG--    GACGU 
.       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-24-P3_5p*

mirBase accession

None

Sequence

0- GUGCCUACUGAGCUGAAACACAGU -24

Get sequence

Mature sequence

Eca-Mir-24-P3_3p

mirBase accession

MIMAT0012987

Sequence

38- UGGCUCAGUUCAGCAGGAACAG -60

Get sequence