MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Horse (Equus caballus)
MiRBase ID eca-mir-27a
Paralogues Eca-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)
CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3)
Mir-23-P3 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Mir-27-P3 CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Mir-24-P3 CM009154.1: 46233360-46233419 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCACCACCUGCGUCUGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUCCACACCGAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCGGCUCCUGCCUCCUCGGCCCUCCGC
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Structure
        10           20        30        40        50        60 
CCCCCACCACCUGCGUCU---|   U    A  A         UG  U       GGGUCCAC 
                     GGCC GGGG GC GGGCUUAGC  CU GUGAGCA        \
                     UCGG CCCC CG CUUGAAUCG  GA CACUUGU        A
CGCCUCCCGGCUCCUCCGUCC^   C    -  C         GU  -       ACUGAGCC 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-27-P3_5p*

mirBase accessionNone
Sequence
0- AGGGCUUAGCUGCUUGUGAGCA -22
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Mature sequence

Eca-Mir-27-P3_3p

mirBase accessionMIMAT0012988
Sequence
41- UUCACAGUGGCUAAGUUCCGC -62
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