MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-27a
Paralogues Ami-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713323.1: 200584-200646 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-27-P3)		 Mir-23-P3 NW_017713323.1: 200394-200456 [+] UCSC
Mir-27-P3 NW_017713323.1: 200584-200646 [+] UCSC
Mir-24-P3 NW_017713323.1: 200859-200919 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGGCCUGGGACACUCCUGAAGCCAGGGCACAGGGCUUAGCUCACCUGUGAACAGAGUUAGCGUUGCAUCAUGUUCACAGUGGCUAAGUUCCGCCUCCUGGUGUCUAUUACCUGGGACUCAGGC
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Structure
        10          20        30        40        50        60  
AGGCCUGGGACACUCCU--| A       CACA         U   C        GAGUUAGC 
                   GA GCCAGGG    GGGCUUAGC CAC UGUGAACA        \
                   CU UGGUCCU    CUUGAAUCG GUG ACACUUGU        G
CGGACUCAGGGUCCAUUAU^ G       CCGC         -   -        ACUACGUU 
 120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Star sequence

Ami-Mir-27-P3_5p*
mirBase accessionMIMAT0038067
Sequence 
0- AGGGCUUAGCUCACCUGUGAACA -23
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Mature sequence

Ami-Mir-27-P3_3p
mirBase accessionMIMAT0038068
Sequence 
42- UUCACAGUGGCUAAGUUCCGC -63
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