| MirGeneDB ID | Cmi-Mir-27-P3 |
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| Family name |
MIR-27 (all species) |
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| Seed |
UCACAGU |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Mir-27-P2
Cmi-Mir-27-P4
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| Orthologues |
Aca-Mir-27-P3
Ami-Mir-27-P3
Bta-Mir-27-P3
Cfa-Mir-27-P3
Cja-Mir-27-P3
Cpi-Mir-27-P3
Cpo-Mir-27-P3
Dno-Mir-27-P3
Dre-Mir-27-P3
Eca-Mir-27-P3
Ete-Mir-27-P3
Gga-Mir-27-P3
Gja-Mir-27-P3
Gmo-Mir-27-P3
Hsa-Mir-27-P3
Laf-Mir-27-P3
Lch-Mir-27-P3
Loc-Mir-27-P3
Mal-Mir-27-P3
Mdo-Mir-27-P3
Mml-Mir-27-P3
Mmr-Mir-27-P3
Mmu-Mir-27-P3
Neu-Mir-27-P3
Oan-Mir-27-P3
Ocu-Mir-27-P3
Pab-Mir-27-P3
Pbv-Mir-27-P3
Rno-Mir-27-P3
Sha-Mir-27-P3
Sto-Mir-27-P3a
Sto-Mir-27-P3b
Tgu-Mir-27-P3
Tni-Mir-27-P3
Xla-Mir-27-P3c
Xla-Mir-27-P3d
Xtr-Mir-27-P3
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635928.1: 354256-354321 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAGGACUUGUUUCUAAGCCCCGUGCGGUGAAGGACUUAGCUAACUCUGUGAACAGAUAUCUGAAUGCCUUCAAUGUUCACAGUGGCUAAGUUCCGCACCUCAGGGGAUGAAUAUCGACAGGAUUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAGGACUUGUUUCUAAG---| G C AA ACU GAUAUCUGA
CCCC UG GGUG GGACUUAGCUA CUGUGAACA \
GGGG AC CCAC CUUGAAUCGGU GACACUUGU A
CUUUAGGACAGCUAUAAGUA^ - U GC --- AACUUCCGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-27-P3_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGACUUAGCUAACUCUGUGAACA -24
Get sequence
|
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| Mature sequence |
Cmi-Mir-27-P3_3p |
| mirBase accession | None |
|---|
| Sequence |
45- UUCACAGUGGCUAAGUUCCGC -66
Get sequence
|
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