MirGeneDB ID | Cmi-Mir-27-P4 |
Family name |
MIR-27 (all species) |
Seed |
UCACAGU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-27-P2
Cmi-Mir-27-P3
|
Orthologues |
Dre-Mir-27-P4a
Gmo-Mir-27-P4a
Gmo-Mir-27-P4b
Lch-Mir-27-P4
Loc-Mir-27-P4
Mal-Mir-27-P4a
Mal-Mir-27-P4b
Sto-Mir-27-P4
Tni-Mir-27-P4a
Tni-Mir-27-P4b
Xla-Mir-27-P4c
Xla-Mir-27-P4d
Xtr-Mir-27-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635918.1: 1565842-1565904 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCCCCAUAGCCUGAGCUCUGUGCUGGUAUAGAGCUUAGCCAUUUGGAGAGCAGUAUCAUUGGAGAGCUUUGUUCACAGUGGCUAAGUUUCAUACCCAGAGAGAAACAACGCAUUGUAUGAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUCCCCAUAGCCUGAGC----| G CU AG U GA AGUAUCAUU
UCU UG GGUAU AGCUUAGCCAUU G GAGC \
AGA AC CCAUA UUGAAUCGGUGA C CUUG G
CUAGUAUGUUACGCAACAAAG^ G -- CU - A- UUUCGAGAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-27-P4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGAGCUUAGCCAUUUGGAGAGC -22
Get sequence
|
Mature sequence |
Cmi-Mir-27-P4_3p |
mirBase accession | None |
Sequence |
42- UUCACAGUGGCUAAGUUUCAU -63
Get sequence
|