| MirGeneDB ID | Xla-Mir-27-P4c |
|---|
| Family name |
MIR-27 (all species) |
|---|
| Seed |
GGACUUA |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Mir-27-P2c
Xla-Mir-27-P2d
Xla-Mir-27-P3c
Xla-Mir-27-P3d
Xla-Mir-27-P4d
|
|---|
| Orthologues |
Cmi-Mir-27-P4
Lch-Mir-27-P4
Loc-Mir-27-P4
Sto-Mir-27-P4
Xtr-Mir-27-P4
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030730.1: 79670161-79670223 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUCUACAAUAUUGAAAUUCUCCAGAGGGGAAGGACUUAGCUGGCUCUGUGAACAGGUCUUUUGUGUUCAAUGUUCACAGUGGCUAAGUUCCACCCCACUGGGAAACAUACUUCUACUGACUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUCUACAAUAUUGAAAU---| U A AA GCU GGUCUUU
UC CCAG GGGG GGACUUAGCUG CUGUGAACA U
AG GGUC CCCC CUUGAAUCGGU GACACUUGU G
UAUCAGUCAUCUUCAUACAA^ - A AC --- AACUUGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Mir-27-P4c_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGGACUUAGCUGGCUCUGUGAACA -24
Get sequence
|
|---|
| Star sequence |
Xla-Mir-27-P4c_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUCCAC -63
Get sequence
|
|---|
