| MirGeneDB ID | Xla-Mir-27-P2d |
|---|
| Family name |
MIR-27 (all species) |
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| Seed |
UCACAGU |
|---|
| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-27-P2c
Xla-Mir-27-P3c
Xla-Mir-27-P3d
Xla-Mir-27-P4c
Xla-Mir-27-P4d
|
|---|
| Orthologues |
Aca-Mir-27-P2
Ami-Mir-27-P2
Bta-Mir-27-P2
Cfa-Mir-27-P2
Cja-Mir-27-P2
Cli-Mir-27-P2
Cmi-Mir-27-P2
Cpi-Mir-27-P2
Cpo-Mir-27-P2
Dno-Mir-27-P2
Eca-Mir-27-P2
Ete-Mir-27-P2
Gga-Mir-27-P2
Gja-Mir-27-P2
Hsa-Mir-27-P2
Laf-Mir-27-P2
Lch-Mir-27-P2
Loc-Mir-27-P2
Mdo-Mir-27-P2
Mml-Mir-27-P2
Mmr-Mir-27-P2
Mmu-Mir-27-P2
Mun-Mir-27-P2
Neu-Mir-27-P2
Oan-Mir-27-P2
Ocu-Mir-27-P2
Pab-Mir-27-P2
Pbv-Mir-27-P2
Pma-Mir-27-o2
Rno-Mir-27-P2
Sha-Mir-27-P2
Spt-Mir-27-P2
Sto-Mir-27-P2
Tgu-Mir-27-P2
Xtr-Mir-27-P2
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030725.1: 110864416-110864478 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCUCACACAGUGACCUUUCUACCAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAGGGCGAGGGGAAGGUGUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCUCACACAGUGACCUU--| ACCA AUUG GUGAUUGA
UCU AGGUGCAGAGCUUAGCUG GUGAACA \
AGA UCCACGUCUUGAAUCGGU CACUUGU U
UUUGUGGAAGGGGAGCGGG^ GAAG GA-- UUCUCCUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-27-P2d_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGCUUAGCUGAUUGGUGAACA -23
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-27-P2d_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUCUGC -63
Get sequence
|
|---|
